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As it turns out, some of CMake's built-in modules for detecting headers and libraries don't work if you have certain compiler flags set, such as -Werror=old-style-definition, as they do "int main()" rather than "int main(void)". Having CMake search for libs before compiler flags are set alleviates this issue, and I believe the underlying issue will be fixed in future releases of CMake.release-v0.4.0.1
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